scaledLL: Compute scaled negative log-likelihood

In ndukler/phyloGLM: Tests for signals of variable rates of evolution between gene classes and lineages for probabalistic alleles

Description

Compute scaled log-likelihood for given rate model object

Arguments

x	a set of parameters to compute the log-likelihood for (optional). Only unfixed parameters.
model	rateModel object
scale	value to scale log-likelihood by (default=1)
threads	number of threads to use
index	integer vector of parameter indicies in vector (0-based)

Value

scaled log-likelihood

ndukler/phyloGLM documentation built on Sept. 25, 2019, 9:17 p.m.