rateModel: rateModel

In ndukler/phyloGLM: Tests for signals of variable rates of evolution between gene classes and lineages for probabalistic alleles

Description

Contructs an object that holds a rate model for a set of alleles

Usage

rateModel(data, rateFormula, piFormula = NULL, lineageTable = NULL,
  rateBounds = c(10^-3, 5))

Arguments

data	An alleleData object
rateFormula	A formula that uses the variables in the allele data object to compute turnover rate
piFormula	A formula that uses the variables in the allele data object to compute pi (if NULL uses the same as rateFormula)
lineageTable	A table with columns parent,child,edgeID, and rateGroup, where rateGroup is used to specify how the rates are tied between the branches

Value

an rateModel object

ndukler/phyloGLM documentation built on Sept. 25, 2019, 9:17 p.m.