lsm_regresfast: Regression tests for symptom mapping (fast)

In neuroconductor-releases/LESYMAP: Lesion to Symptom Mapping in R

Description

Lesion to symptom mapping performed on a prepared matrix. Regressions are performed between behavior and each column of the lesmat matrix. Fast function based on compiled code.

Usage

lsm_regresfast(lesmat, behavior, covariates = NA, FWERperm = F,
  nperm = 1000, v = 1, pThreshold = 0.05, clusterPerm = F,
  mask = NA, voxindx = NA, samplemask = NA,
  clusterPermThreshold = 0.05, showInfo = T, ...)

Arguments

lesmat	matrix of voxels (columns) and subjects (rows).
behavior	vector of behavioral scores.
covariates	(default=NA) vector of matrix of covariates.
FWERperm	logical (default=FALSE) whether to run permutation based FWER thresholding.
nperm	Number of permutations to perform when needed.
v	(default=1) what voxel to record for FWER thresholding.
pThreshold	(default=0.05) Voxel-wise threshold.
clusterPerm	logical (default=FALSE), whether to perform permutation based cluster thresholding.
mask	(default=NA) antsImage reference mask used for cluster computations.
voxindx	(default=NA) indices of voxels to put in mask
samplemask	(default=NA) antsImage used to extract voxels back in a matrix.
clusterPermThreshold	(default=0.05) threshold for cluster selection after obtaining cluster size distrubution.
showInfo	display info messagges when running the function.
...	other arguments received from lesymap.

Value

List of objects returned:

• statistic - vector of statistical values

• pvalue - vector of pvalues

• zscore - vector of zscores

• perm.vector - (optional) vector of permuted statistics

• perm.FWERthresh - (optional) permutation threshold established from the distribution of perm.vector

• perm.clusterThreshold - (optional) permutation threshold established from the distribution of perm.vector

Author(s)

Dorian Pustina

Examples

{
set.seed(123)
lesmat = matrix(rbinom(200,1,0.5), ncol=2)
set.seed(123)
behavior = rnorm(100)
result = lsm_regresfast(lesmat, behavior)
}

neuroconductor-releases/LESYMAP documentation built on Nov. 13, 2020, 11:28 p.m.