gather_files_names: Make file names

In neurogenomics/EpiCompare: Comparison, Benchmarking & QC of Epigenomic Datasets

Make file names

Description

Support function for gather_files.

Usage

gather_files_names(paths, type, nfcore_cutandrun, verbose = TRUE)

Arguments

paths	Character vector of file paths.
type	File type to search for. Options include: "<pattern>"Finds files matching an arbitrary regex pattern specified by user. "peaks.stringent"Finds files ending in "*.stringent.bed$" "peaks.consensus"Finds files ending in "*.consensus.peaks.bed$" "peaks.consensus.filtered" Finds files ending in"*.consensus.peaks.filtered.awk.bed$" "picard"Finds files ending in "*.target.markdup.MarkDuplicates.metrics.txt$"
nfcore_cutandrun	Whether the files were generated by the nf-core/cutandrun Nextflow pipeline. If TRUE, can use the standardised folder structure to automatically generate more descriptive file names with sample IDs.
verbose	Print messages.

Value

Named character vector.

neurogenomics/EpiCompare documentation built on April 30, 2024, 3:58 p.m.