API for neurogenomics/EpiCompare
Comparison, Benchmarking & QC of Epigenomic Datasets
| Global functions | |
|---|---|
| CnR_H3K27ac | Man page |
| CnR_H3K27ac_picard | Man page |
| CnT_H3K27ac | Man page |
| CnT_H3K27ac_picard | Man page |
| EpiCompare | Man page Source code |
| as_interactive | Man page Source code |
| bpplapply | Man page Source code |
| checkCache | Man page Source code |
| check_cell_lines | Man page Source code |
| check_dep | Source code |
| check_genome_build | Man page Source code |
| check_grlist_cols | Man page Source code |
| check_heatmap_args | Source code |
| check_list_names | Man page Source code |
| check_unused_args | Source code |
| check_workers | Man page Source code |
| clean_granges | Man page Source code |
| compute_consensus_peaks | Man page Source code |
| compute_consensus_peaks_consensusseeker | Source code |
| compute_consensus_peaks_granges | Source code |
| compute_corr | Man page Source code |
| compute_percentiles | Source code |
| download_button | Man page Source code |
| encode_H3K27ac | Man page |
| fig_length | Man page Source code |
| filter_percentiles | Source code |
| fragment_info | Man page Source code |
| gather_files | Man page Source code |
| gather_files_names | Man page Source code |
| get_bpparam | Man page Source code |
| get_chain_file | Source code |
| get_chromHMM_annotation | Man page Source code |
| get_pkg_data | Source code |
| group_files | Man page Source code |
| heatmap_heatmaply | Source code |
| heatmap_plotly | Source code |
| hg19_blacklist | Man page |
| hg38_blacklist | Man page |
| is_granges | Man page Source code |
| liftover_grlist | Man page Source code |
| message_parallel | Man page Source code |
| messager | Man page Source code |
| mm10_blacklist | Man page |
| mm9_blacklist | Man page |
| overlap_heatmap | Man page Source code |
| overlap_percent | Man page Source code |
| overlap_stat_plot | Man page Source code |
| overlap_upset_plot | Man page Source code |
| peak_info | Man page Source code |
| plot_ChIPseeker_annotation | Man page Source code |
| plot_chromHMM | Man page Source code |
| plot_corr | Man page Source code |
| plot_enrichment | Man page Source code |
| plot_precision_recall | Man page Source code |
| plot_precision_recall_f1 | Source code |
| plot_precision_recall_prcurve | Source code |
| precision_recall | Man page Source code |
| precision_recall_matrix | Man page Source code |
| predict_precision_recall | Man page Source code |
| predict_values | Man page Source code |
| prepare_blacklist | Man page Source code |
| prepare_genome_builds | Man page Source code |
| prepare_output_build | Source code |
| prepare_peaklist | Man page Source code |
| prepare_reference | Man page Source code |
| read_bam | Source code |
| read_bowtie | Man page Source code |
| read_multiqc | Source code |
| read_peaks | Man page Source code |
| read_picard | Source code |
| read_trimgalore | Source code |
| rebin_peaks | Man page Source code |
| remove_empty_elements | Source code |
| remove_nonstandard_chrom | Man page Source code |
| report_command | Man page Source code |
| report_header | Man page Source code |
| report_time | Source code |
| save_output | Man page Source code |
| save_results | Source code |
| set_min_max | Man page Source code |
| stopper | Man page Source code |
| tidy_peakfile | Man page Source code |
| translate_genome | Man page Source code |
| tss_plot | Man page Source code |
| width_boxplot | Man page Source code |
| write_example_peaks | Man page Source code |
