mm10_blacklist: Mouse genome mm10 blacklisted regions
In neurogenomics/EpiCompare: Comparison, Benchmarking & QC of Epigenomic Datasets

mm10_blacklist

R Documentation

Mouse genome mm10 blacklisted regions

Description

Obtained from https://www.encodeproject.org/files/ENCFF547MET/. The ENCODE blacklist includes regions of the mm10 genome that have anomalous and/or unstructured signals independent of the cell-line or experiment. Removal of ENCODE blacklist is recommended for quality measure.

Usage

data("mm10_blacklist")

Format

An object of class GRanges of length 164.

Source

The code to prepare the .Rda file is:

## blacklisted regions were directly downloaded
## from https://www.encodeproject.org/files/ENCFF547MET/
mm10_blacklist <- ChIPseeker::readPeakFile(file.path(path), as = "GRanges")
usethis::use_data(mm10_blacklist, overwrite = TRUE)