mm10_blacklist: Mouse genome mm10 blacklisted regions
In neurogenomics/EpiCompare: Comparison, Benchmarking & QC of Epigenomic Datasets
mm10_blacklist R Documentation
Mouse genome mm10 blacklisted regions
Description
Obtained from https://www.encodeproject.org/files/ENCFF547MET/.
The ENCODE blacklist includes regions of the mm10 genome that have anomalous
and/or unstructured signals independent of the cell-line or experiment.
Removal of ENCODE blacklist is recommended for quality measure.
Usage
data("mm10_blacklist")
Format
An object of class GRanges of length 164.
Source
The code to prepare the .Rda file is:
## blacklisted regions were directly downloaded
## from https://www.encodeproject.org/files/ENCFF547MET/
mm10_blacklist <-
ChIPseeker::readPeakFile(file.path(path), as = "GRanges")
usethis::use_data(mm10_blacklist, overwrite = TRUE)
neurogenomics/EpiCompare documentation built on April 30, 2024, 3:58 p.m.
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| mm10_blacklist | R Documentation |
Mouse genome mm10 blacklisted regions
Description
Obtained from https://www.encodeproject.org/files/ENCFF547MET/. The ENCODE blacklist includes regions of the mm10 genome that have anomalous and/or unstructured signals independent of the cell-line or experiment. Removal of ENCODE blacklist is recommended for quality measure.
Usage
data("mm10_blacklist")
Format
An object of class GRanges of length 164.
Source
The code to prepare the .Rda file is:
## blacklisted regions were directly downloaded
## from https://www.encodeproject.org/files/ENCFF547MET/
mm10_blacklist <-
ChIPseeker::readPeakFile(file.path(path), as = "GRanges")
usethis::use_data(mm10_blacklist, overwrite = TRUE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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