prepare_blacklist: Prepare blacklist as GRanges
In neurogenomics/EpiCompare: Comparison, Benchmarking & QC of Epigenomic Datasets

prepare_blacklist

R Documentation

Prepare blacklist as GRanges

Selects the appropriate blacklist in a variety of conditions.

prepare_blacklist(
  blacklist,
  output_build,
  blacklist_build = NULL,
  verbose = TRUE
)

`output_build`	Desired genome build for `grlist` to be lifted over to.
`blacklist_build`	Genome build of the blacklist. Only used when `blacklist` is a user-supplied GRanges object.
`verbose`	Print messages.

A GRanges objects of blacklisted genomic regions from the relevant genome build.

neurogenomics/EpiCompare documentation built on April 30, 2024, 3:58 p.m.

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