remove_nonstandard_chrom: Remove non-standard chromosomes
In neurogenomics/EpiCompare: Comparison, Benchmarking & QC of Epigenomic Datasets
View source: R/remove_nonstandard_chrom.R
remove_nonstandard_chrom R Documentation
Remove non-standard chromosomes
Description
Remove non-standard chromosomes from a list of
GRanges objects.
Usage
remove_nonstandard_chrom(
grlist,
keep_chr = paste0("chr", c(seq_len(22), "X", "Y")),
verbose = TRUE
)
Arguments
grlist
Named list of GRanges objects.
keep_chr
Which chromosomes to keep.
verbose
Print messages.
Value
Named list of GRanges objects.
neurogenomics/EpiCompare documentation built on April 30, 2024, 3:58 p.m.
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View source: R/remove_nonstandard_chrom.R
| remove_nonstandard_chrom | R Documentation |
Remove non-standard chromosomes
Description
Remove non-standard chromosomes from a list of GRanges objects.
Usage
remove_nonstandard_chrom(
grlist,
keep_chr = paste0("chr", c(seq_len(22), "X", "Y")),
verbose = TRUE
)
Arguments
grlist |
Named list of GRanges objects. |
keep_chr |
Which chromosomes to keep. |
verbose |
Print messages. |
Value
Named list of GRanges objects.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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