API for neurogenomics/HPOExplorer
Analysis and Visualisation of the Human Phenotype Ontology
| Global functions | |
|---|---|
| add_ | Man page |
| add_ancestor | Man page Source code |
| add_death | Man page Source code |
| add_disease | Man page Source code |
| add_disease_genes | Man page Source code |
| add_evidence | Man page Source code |
| add_gene_frequency | Man page Source code |
| add_genes | Man page Source code |
| add_gpt_annotations | Man page Source code |
| add_hpo_definition | Man page Source code |
| add_hpo_id | Man page Source code |
| add_hpo_name | Man page Source code |
| add_info_content | Man page Source code |
| add_mondo | Man page Source code |
| add_ndisease | Man page Source code |
| add_omop | Man page Source code |
| add_onset | Man page Source code |
| add_ont_lvl | Man page Source code |
| add_pheno_frequency | Man page Source code |
| add_prevalence | Man page Source code |
| add_prevalence_report | Source code |
| add_severity | Man page Source code |
| add_tier | Man page Source code |
| annotate_phenos | Man page Source code |
| as_ascii | Source code |
| disease_id_to_omop | Man page |
| disease_map | Man page |
| example_phenos | Man page Source code |
| filter_ | Man page |
| filter_descendants | Man page Source code |
| fix_hpo_ids | Man page Source code |
| get_ | Man page |
| get_data | Man page Source code |
| get_freq_dict | Source code |
| get_gene_lists | Man page Source code |
| get_hpo | Man page Source code |
| get_hpo_id_direct | Man page Source code |
| get_term_definition_api | Man page Source code |
| get_term_definition_data | Source code |
| get_top_phenos | Man page Source code |
| gpt_annot_check | Man page Source code |
| gpt_annot_check_plot | Source code |
| gpt_annot_class | Man page Source code |
| gpt_annot_codify | Man page Source code |
| gpt_annot_melt | Man page Source code |
| gpt_annot_plot | Man page Source code |
| gpt_annot_plot_branches | Man page Source code |
| gpt_annot_read | Man page Source code |
| hpo_api | Man page Source code |
| hpo_death_agg | Source code |
| hpo_deaths | Man page |
| hpo_dict | Source code |
| hpo_frequencies | Man page |
| hpo_frequencies_agg | Source code |
| hpo_id_to_omop | Man page |
| hpo_modifiers | Man page |
| hpo_modifiers_agg | Source code |
| hpo_onsets | Man page |
| hpo_onsets_agg | Source code |
| hpo_tiers | Man page |
| hpo_tiers_auto | Man page |
| hpo_to_matrix | Man page Source code |
| list_columns | Man page Source code |
| list_deaths | Man page Source code |
| list_onsets | Man page Source code |
| load_phenotype_to_genes | Man page Source code |
| main | Man page |
| make_ | Man page |
| make_igraph_object | Man page Source code |
| make_network_object | Man page Source code |
| make_network_plot | Man page Source code |
| make_node_data | Source code |
| make_phenos_dataframe | Man page Source code |
| make_tiers | Man page Source code |
| map_ | Man page |
| map_disease | Man page Source code |
| map_phenotypes | Man page Source code |
| message_parallel | Source code |
| messager | Source code |
| newlines_to_definition | Man page Source code |
| parse_frequency | Source code |
| parse_pheno_frequency | Source code |
| per_branch_plot | Man page Source code |
| phenos_to_granges | Man page Source code |
| pkg_data | Source code |
| plot_arrow | Man page Source code |
| plot_evidence | Man page Source code |
| plot_top_phenos | Man page Source code |
| report_missing | Source code |
| search_hpo | Man page Source code |
| unlist_col | Man page Source code |
