plot_evidence: Plot evidence

In neurogenomics/HPOExplorer: Analysis and Visualisation of the Human Phenotype Ontology

Plot evidence

Description

Plot the distribution of evidence scores for gene-disease and gene-phenotype associations.

Usage

plot_evidence(
  metric = "evidence_score_sum",
  phenotype_to_genes = load_phenotype_to_genes(),
  show_plot = TRUE,
  save_path = NULL,
  height = NULL,
  width = NULL
)

Arguments

metric	Aggregated metric of evidence to assess.
phenotype_to_genes	Output of load_phenotype_to_genes mapping phenotypes to gene annotations.
show_plot	Show the plot.
save_path	Path to save interactive plot to as a self-contained HTML file.
height	Height of the heatmap body.
width	Width of the heatmap body.

Examples

out <- plot_evidence()

neurogenomics/HPOExplorer documentation built on July 17, 2024, 3:12 p.m.