gpt_annot_melt: Melt annotations from GPT

In neurogenomics/HPOExplorer: Analysis and Visualisation of the Human Phenotype Ontology

Melt annotations from GPT

Description

Merge the annotations from GPT with the weighted annotations and melt the resulting data.table such that each annotation metric is a separate row.

Usage

gpt_annot_melt(
  res_coded,
  id.vars = grep("justification|phenotype|hpo_name|hpo_id|pheno_count",
    names(res_coded$annot), value = TRUE)
)

Arguments

res_coded	Result from gpt_annot_codify.
id.vars	Columns to use as ID variables when merging.

Value

A melted data.table with the annotations.

Examples

res_coded <- gpt_annot_codify()
annot_melt <- gpt_annot_melt(res_coded)

neurogenomics/HPOExplorer documentation built on July 17, 2024, 3:12 p.m.