hpo_id_to_omop: Human Phenotype Ontology: HPO ID to OMOP
In neurogenomics/HPOExplorer: Analysis and Visualisation of the Human Phenotype Ontology
hpo_id_to_omop R Documentation
Human Phenotype Ontology: HPO ID to OMOP
Description
Mapping of HPO phenotype IDs (hpo_id) to OMOP concepts (OMOP_ID).
Usage
hpo_id_to_omop
Format
An object of class data.table (inherits from data.frame) with 16426 rows and 3 columns.
Source
hpo <- get_hpo()
ids <- unique(hpo@terms)
hpo_id_to_omop <- oard_query_api(ids = ids, workers=10)
input_col="hpo_id"
data.table::setnames(hpo_id_to_omop,
toupper(gsub("concept_","OMOP_",names(hpo_id_to_omop)))
)
data.table::setnames(hpo_id_to_omop, "OMOP_CODE",input_col)
hpo_id_to_omop <- hpo_id_to_omop[,c(input_col,"OMOP_ID","OMOP_NAME"),
with=FALSE]
usethis::use_data(hpo_id_to_omop, overwrite = TRUE)
@format data.table
@usage data("hpo_id_to_omop")
neurogenomics/HPOExplorer documentation built on Aug. 24, 2024, 1:39 a.m.
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| hpo_id_to_omop | R Documentation |
Human Phenotype Ontology: HPO ID to OMOP
Description
Mapping of HPO phenotype IDs (hpo_id) to OMOP concepts (OMOP_ID).
Usage
hpo_id_to_omop
Format
An object of class data.table (inherits from data.frame) with 16426 rows and 3 columns.
Source
hpo <- get_hpo()
ids <- unique(hpo@terms)
hpo_id_to_omop <- oard_query_api(ids = ids, workers=10)
input_col="hpo_id"
data.table::setnames(hpo_id_to_omop,
toupper(gsub("concept_","OMOP_",names(hpo_id_to_omop)))
)
data.table::setnames(hpo_id_to_omop, "OMOP_CODE",input_col)
hpo_id_to_omop <- hpo_id_to_omop[,c(input_col,"OMOP_ID","OMOP_NAME"),
with=FALSE]
usethis::use_data(hpo_id_to_omop, overwrite = TRUE)
@format data.table
@usage data("hpo_id_to_omop")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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