hpo_api: HPO API

In neurogenomics/HPOExplorer: Analysis and Visualisation of the Human Phenotype Ontology

HPO API

Description

Extract data from the Human Phenotype Ontology (HPO) using the Application Programming Interface (API).

Usage

hpo_api(
  hpo_id,
  type = list(NULL, "genes", "diseases")[[1]],
  url = paste("hpo.jax.org/api/hpo/term", hpo_id, type, sep = "/")
)

Arguments

hpo_id	HPO ID for a given term.
type	Type of data to extract. Set NULL to return all data.
url	API entry point. See HPO API documentation for details.

Value

A named list or data.frame of metadata for a given HPO ID.

Examples

## Not run: 
dat <- hpo_api(hpo_id="HP:0011420", type="diseases")

## End(Not run)

neurogenomics/HPOExplorer documentation built on Aug. 24, 2024, 1:39 a.m.