gpt_annot_plot_branches: Plot annotations from GPT: by branch

In neurogenomics/HPOExplorer: Analysis and Visualisation of the Human Phenotype Ontology

Plot annotations from GPT: by branch

Description

Plot annotations from GPT by ancestral HPO branch.

Usage

gpt_annot_plot_branches(
  hpo = get_hpo(),
  gpt_annot = gpt_annot_read(hpo = hpo),
  keep_descendants = NULL,
  keep_ont_levels = NULL,
  metric = "congenital_onset",
  fill_lab = gsub("_", " ", metric),
  show_plot = TRUE
)

Arguments

hpo	Human Phenotype Ontology object, loaded from get_ontology.
gpt_annot	Output from gpt_annot_read.
keep_descendants	Terms whose descendants should be kept (including themselves). Set to NULL (default) to skip this filtering step.
keep_ont_levels	Only keep phenotypes at certain absolute ontology levels to keep. See add_ont_lvl for details.
metric	Annotation metric to plot.
fill_lab	Fill label in legend.
show_plot	Show the plot.

Value

Named list of plot and data.

Examples

out <- gpt_annot_plot_branches()

neurogenomics/HPOExplorer documentation built on Aug. 24, 2024, 1:39 a.m.