Man pages for neurogenomics/HPOExplorer
Analysis and Visualisation of the Human Phenotype Ontology
| add_ | Add functions |
| add_disease | Add diseases |
| disease_id_to_omop | Human Phenotype Ontology: Disease ID to OMOP |
| disease_map | Human Phenotype Ontology: Disease ID to Disease Name and... |
| filter_ | Filter functions |
| fix_hpo_ids | Fix missing HPO IDs |
| get_ | Get functions |
| get_data | Get remote data |
| get_gene_lists | Get gene list |
| get_term_definition_api | Get term definition: API |
| get_top_phenos | Get top phenotypes |
| gpt_annot_check | Check annotations from GPT |
| gpt_annot_class | GPT annotations: add severity class |
| gpt_annot_codify | Check annotations from GPT |
| gpt_annot_melt | Melt annotations from GPT |
| gpt_annot_plot | Plot annotations from GPT |
| gpt_annot_plot_branches | Plot annotations from GPT: by branch |
| gpt_annot_read | Read annotations from GPT |
| hpo_api | HPO API |
| hpo_deaths | Human Phenotype Ontology: Age of Death |
| hpo_frequencies | Human Phenotype Ontology: phenotype frequencies |
| hpo_id_to_omop | Human Phenotype Ontology: HPO ID to OMOP |
| hpo_modifiers | Human Phenotype Ontology: disease modifiers |
| hpo_onsets | Human Phenotype Ontology: disease onset |
| hpo_tiers | Human Phenotype Ontology: disease severity tiers |
| hpo_tiers_auto | Human Phenotype Ontology: disease severity tiers (auto) |
| hpo_to_matrix | HPO to matrix |
| list_columns | List columns |
| load_phenotype_to_genes | Load phenotype_to_genes |
| main | Main functions |
| make_ | Make functions |
| map_ | Map functions |
| map_disease | Map disease |
| map_phenotypes | Harmonise phenotypes |
| newlines_to_definition | Add new lines to disease description |
| per_branch_plot | Plot N phenotypes per branch |
| phenos_to_granges | Phenotypes to GenomicRanges |
| plot_arrow | Plot arrow |
| plot_evidence | Plot evidence |
| plot_top_phenos | Plot top phenotypes |
| search_hpo | Search the Human Phenotype Ontology |
| unlist_col | Unlist column |
