README.md
In neurogenomics/PeakyFinders: Mining, Calling, and Importing Epigenomic Peaks in R
Authors: Brian Schilder
README updated: Feb-28-2023
PeakyFinders: Mining, Calling, and Importing Epigenomic Peaks in R
Contains flexible and user-friendly functions to find, import, and
harmonise epigenomic peaks data from GEO, ENCODE, ROADMAP,
and AnnotationHub. Efficiently imports multiple peak files in one
function call (either genome-wide or specific regions) using
parallelisation. When peaks are not available, automatically calls peaks
from bedGraph or bigWig files.
If you use PeakyFinders, please cite:
author1, author2, author3 (publicationYear) articleTitle,
journalName; volumeNumber, linkToPublication
Installation
if(!require("remotes")) install.packages("remotes")
remotes::install_github("https://github.com/neurogenomics/PeakyFinders")
library(PeakyFinders)
Documentation
Website
Getting started
Contact
Neurogenomics Lab
UK Dementia Research Institute
Department of Brain Sciences
Faculty of Medicine
Imperial College London
GitHub
DockerHub
neurogenomics/PeakyFinders documentation built on Oct. 14, 2024, 3:09 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Authors: Brian Schilder
README updated: Feb-28-2023
PeakyFinders: Mining, Calling, and Importing Epigenomic Peaks in R
Contains flexible and user-friendly functions to find, import, and harmonise epigenomic peaks data from GEO, ENCODE, ROADMAP, and AnnotationHub. Efficiently imports multiple peak files in one function call (either genome-wide or specific regions) using parallelisation. When peaks are not available, automatically calls peaks from bedGraph or bigWig files.
If you use PeakyFinders, please cite:
author1, author2, author3 (publicationYear) articleTitle, journalName; volumeNumber, linkToPublication
Installation
if(!require("remotes")) install.packages("remotes")
remotes::install_github("https://github.com/neurogenomics/PeakyFinders")
library(PeakyFinders)
Documentation
Website
Getting started
Contact
Neurogenomics Lab
UK Dementia Research Institute Department of Brain Sciences Faculty of Medicine Imperial College London GitHub DockerHub
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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