import_bedgraph_chroms: Get chromosomes

In neurogenomics/PeakyFinders: Mining, Calling, and Importing Epigenomic Peaks in R

Get chromosomes

Description

Query a bedGraph file by a subset of chromosomes. This allows you to query whole chromosomes at a time, without needing to import the entire bedGraph file.

Usage

import_bedgraph_chroms(
  URL,
  chroms = NULL,
  build = "hg38",
  import_format = "bedGraph",
  export_format = import_format,
  save_path = NULL,
  verbose = TRUE
)

Value

GRanges

Source

GitHub Issues: conflicts with BiocGenerics

neurogenomics/PeakyFinders documentation built on March 24, 2024, 4:28 p.m.