peaks_metadata_roadmap: Metadata for epigenomic peaks: ROADMAP

peaks_metadata_roadmapR Documentation

Metadata for epigenomic peaks: ROADMAP

Description

A subset of metadata from the Encyclopedia of DNA Elements (ENCODE) that only includes entries for peaks (narrowPeak and broadPeak). Metadata originally sourced from AnnotationHub with additional post-processing and filtering.

Usage

data("peaks_metadata_roadmap")

Format

An object of class data.table (inherits from data.frame) with 3146 rows and 23 columns.

Source

meta <- search_roadmap() peaks_metadata_roadmap <- meta[output_category=="peaks" & (!is.na(biosample_id)),] usethis::use_data(peaks_metadata_roadmap, overwrite = TRUE)


neurogenomics/PeakyFinders documentation built on Oct. 14, 2024, 3:09 p.m.