peaks_metadata_roadmap: Metadata for epigenomic peaks: ROADMAP
In neurogenomics/PeakyFinders: Mining, Calling, and Importing Epigenomic Peaks in R
peaks_metadata_roadmap R Documentation
Metadata for epigenomic peaks: ROADMAP
Description
A subset of metadata from the Encyclopedia of DNA Elements
(ENCODE) that only includes
entries for peaks (narrowPeak and broadPeak).
Metadata originally sourced from AnnotationHub with
additional post-processing and filtering.
Usage
data("peaks_metadata_roadmap")
Format
An object of class data.table (inherits from data.frame) with 3146 rows and 23 columns.
Source
meta <- search_roadmap()
peaks_metadata_roadmap <- meta[output_category=="peaks" &
(!is.na(biosample_id)),]
usethis::use_data(peaks_metadata_roadmap, overwrite = TRUE)
neurogenomics/PeakyFinders documentation built on March 24, 2024, 4:28 p.m.
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| peaks_metadata_roadmap | R Documentation |
Metadata for epigenomic peaks: ROADMAP
Description
A subset of metadata from the Encyclopedia of DNA Elements (ENCODE) that only includes entries for peaks (narrowPeak and broadPeak). Metadata originally sourced from AnnotationHub with additional post-processing and filtering.
Usage
data("peaks_metadata_roadmap")
Format
An object of class data.table (inherits from data.frame) with 3146 rows and 23 columns.
Source
meta <- search_roadmap()
peaks_metadata_roadmap <- meta[output_category=="peaks" &
(!is.na(biosample_id)),]
usethis::use_data(peaks_metadata_roadmap, overwrite = TRUE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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