peaks_metadata_annotationhub: Metadata for epigenomic peaks: AnnotationHub
In neurogenomics/PeakyFinders: Mining, Calling, and Importing Epigenomic Peaks in R
peaks_metadata_annotationhub R Documentation
Metadata for epigenomic peaks: AnnotationHub
Description
A subset of metadata from AnnotationHub that only includes
entries for peaks (narrowPeak and broadPeak).
Usage
data("peaks_metadata_annotationhub")
Format
An object of class data.table (inherits from data.frame) with 12483 rows and 24 columns.
Source
meta <- search_annotationhub()
searches <- construct_searches(keys = c("broadpeak","narrowpeak","genericpeak"))
search_strings <- paste(unname(unlist(searches)),collapse = "|")
peaks_metadata_annotationhub <- meta[with(meta,
grepl(search_strings,
paste(title,description,sourcetype,sourceurl),
ignore.case = TRUE)
),
]
PeakyFinders:::drop_empty_cols(peaks_metadata_annotationhub)
usethis::use_data(peaks_metadata_annotationhub, overwrite = TRUE)
neurogenomics/PeakyFinders documentation built on March 24, 2024, 4:28 p.m.
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| peaks_metadata_annotationhub | R Documentation |
Metadata for epigenomic peaks: AnnotationHub
Description
A subset of metadata from AnnotationHub that only includes entries for peaks (narrowPeak and broadPeak).
Usage
data("peaks_metadata_annotationhub")
Format
An object of class data.table (inherits from data.frame) with 12483 rows and 24 columns.
Source
meta <- search_annotationhub()
searches <- construct_searches(keys = c("broadpeak","narrowpeak","genericpeak"))
search_strings <- paste(unname(unlist(searches)),collapse = "|")
peaks_metadata_annotationhub <- meta[with(meta,
grepl(search_strings,
paste(title,description,sourcetype,sourceurl),
ignore.case = TRUE)
),
]
PeakyFinders:::drop_empty_cols(peaks_metadata_annotationhub)
usethis::use_data(peaks_metadata_annotationhub, overwrite = TRUE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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