prepareExpressionDrugSensitivityAssociation: Prepare gene expression and drug sensitivity correlation...

In nuno-agostinho/cTRAP: Identification of candidate causal perturbations from differential gene expression data

Prepare gene expression and drug sensitivity correlation matrix

Description

Prepare gene expression and drug sensitivity correlation matrix

Usage

prepareExpressionDrugSensitivityAssociation(
  dataset = c("GDSC 7", "CTRP 2.1", "NCI60"),
  method = "spearman"
)

Arguments

dataset	Character: dataset to use (CTRP, GDSC or NCI60)
method	Character: correlation method to use between gene expression and drug sensitivity

Details

If path directs to non-existing files, data will be downloaded.

Value

Correlation matrix between gene expression and drug sensitivity

nuno-agostinho/cTRAP documentation built on March 28, 2024, 3:59 p.m.