processByChunks: Process data by chunks

In nuno-agostinho/cTRAP: Identification of candidate causal perturbations from differential gene expression data

Process data by chunks

Description

Process data by chunks

Usage

processByChunks(
  data,
  FUN,
  num,
  ...,
  threads = 1,
  chunkGiB = 1,
  verbose = FALSE
)

Arguments

data	Character containing a HDF5 file path (allowing partial loading) or data matrix (processed as single chunk if data matrix)
FUN	Function: function to run for each chunk
num	Numeric: numbers of methods to run per chunk
...	Arguments passed to FUN
threads	Integer: number of parallel threads
chunkGiB	Numeric: size (in gibibytes) of chunks to load reference file; only if argument reference is a file path
verbose	Boolean: print additional details?

Value

Results of running FUN

Note

All rows from file are currently loaded when processing chunks.

nuno-agostinho/cTRAP documentation built on March 28, 2024, 3:59 p.m.