readGctxMeta: Parse row or column metadata from GCTX files

In nuno-agostinho/cTRAP: Identification of candidate causal perturbations from differential gene expression data

Parse row or column metadata from GCTX files

Description

Parse row or column metadata from GCTX files

Usage

readGctxMeta(
  gctx_path,
  dimension = "row",
  ids = NULL,
  set_annot_rownames = TRUE
)

Arguments

gctx_path	the path to the GCTX file
dimension	which metadata to read (row or column)
ids	a character vector of a subset of row/column ids for which to read the metadata
set_annot_rownames	a boolean indicating whether to set the rownames attribute of the returned data.frame to the corresponding row/column ids.

Value

a data.frame of metadata

Source

https://github.com/cmap/cmapR

See Also

Other GCTX parsing functions: fix.datatypes(), processIds(), readGctxIds()

nuno-agostinho/cTRAP documentation built on March 28, 2024, 3:59 p.m.