parseMisoEvent | R Documentation |
Parse an alternative splicing event from MISO
parseMisoEvent(event)
event |
Data.frame containing only one event with at least 7 columns as retrieved from the alternative splicing annotation files from MISO (GFF3 files) |
More information about MISO available at http://miso.readthedocs.org
List with event attributes and junction positions for the exons (depends on the events)
# example of alternative splicing event: skipped exon (SE)
event <- read.table(text = "
chr1 SE gene 16854 18061 . - .
chr1 SE mRNA 16854 18061 . - .
chr1 SE exon 16854 17055 . - .
chr1 SE exon 17233 17742 . - .
chr1 SE exon 17915 18061 . - .
chr1 SE mRNA 16854 18061 . - .
chr1 SE exon 16854 17955 . - .
chr1 SE exon 17915 18061 . - .")
psichomics:::parseMisoEvent(event)
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