Man pages for nwfsc-assess/nwfscDeltaGLM
Bayesian delta-GLM package for constructing indices of CPUE data
| AFSCforeign_hauls | AFSC Haul join characteristics for 409 hauls. |
| cMx | Convert object to matrix |
| ComputeIndices | Compute index of abundance |
| ComputeMleIndices | Compute MLE index of abundance |
| ConvergencePlot | Compute MLE index of abundance |
| corFunction | Function to calculate the correlations from the precision... |
| defaultLimits | Haul characteristics for 1756 hauls. |
| doMCMCDiags | This function is a high level function to be called by the... |
| Example_Species | Haul characteristics for 4475 hauls. |
| fitDeltaGLM | This function writes, and optionally runs the model in the... |
| logDensity | This function is in development stage, but used to generate... |
| MapData | Plot tows on a map. This function produces a plot (originally... |
| MCMCDiagnosticsPlot | Gelman-Rubin diagnostics. This function does MCMC... |
| nwfscDeltaGLM-package | Package for conducting Bayesian estimation of CPUE index... |
| PlotData | Plot data |
| PlotOffset | PlotOffset plots the positive and presence absence offset by... |
| PosteriorPredictive | Experimental function for calculating log-scores |
| processData | Process raw haul data |
| readIn | Scan data |
| SA3 | Haul characteristics for 1756 hauls. |
| SimSimple | Simulate data |
| strata.fn | Assign latitude and longitude to strata |
