doMCMCDiags: This function is a high level function to be called by the...

In nwfsc-assess/nwfscDeltaGLM: Bayesian delta-GLM package for constructing indices of CPUE data

This function is a high level function to be called by the user, and implements all of the plotting, diagnostic, and output summaries available. It is applicable to one or more fitted model objects, stored in a list object.

Description

This function is a high level function to be called by the user, and implements all of the plotting, diagnostic, and output summaries available. It is applicable to one or more fitted model objects, stored in a list object.

Usage

doMCMCDiags(
  datalist,
  strata.limits,
  directory,
  mods,
  StrataWeights = "StrataAreas",
  McmcDiagnostics = FALSE
)

Arguments

datalist	Data
strata.limits	limits of strata
directory	The directory to save output in
mods	A list of one or more fitted delta-GLMM model objects
StrataWeights	Weights, defaults to "StrataAreas", also can be "Equal"
McmcDiagnostics	Boolean indicating whether or not to make the MCMCdiagnostics plots, defaults to FALSE

Value

Returns a list of output, by year and by Strata:Year

See Also

MapData, ConvergencePlot, McmcDiagnosticsPlot, PlotOffset, PosteriorPredictive, ComputeIndices, ComputeMleIndices

nwfsc-assess/nwfscDeltaGLM documentation built on July 8, 2023, 4:49 a.m.