ComputeIndices: Compute index of abundance

In nwfsc-assess/nwfscDeltaGLM: Bayesian delta-GLM package for constructing indices of CPUE data

Compute index of abundance

Description

Compute index of abundance

Usage

ComputeIndices(
  Data,
  Model,
  FileName,
  maxDims = 6,
  Folder = NA,
  Weights = "StrataAreas",
  StrataTable,
  PlotStrataYearMcmc = TRUE
)

Arguments

Data	The data to be fit
Model	The model object (as a list)
FileName	The name of the file/directory
maxDims	aesthetics argument for plot as dimensions of rows/columns, defaults to 6
Folder	Optional argument for named folder to store results (in current working directory)
Weights	Defaults to "StrataAreas", other option is "Equal"
StrataTable	Table of strata, required
PlotStrataYearMcmc	Whether to plot MCMC chains for each Strata:Year, defaults to TRUE

Value

Returns a list of output, by year and by Strata:Year

nwfsc-assess/nwfscDeltaGLM documentation built on July 8, 2023, 4:49 a.m.