ConvergencePlot: Compute MLE index of abundance

In nwfsc-assess/nwfscDeltaGLM: Bayesian delta-GLM package for constructing indices of CPUE data

Compute MLE index of abundance

Description

Compute MLE index of abundance

Usage

ConvergencePlot(
  McmcArray,
  maxDims = 8,
  parToMonitor,
  parnames,
  Nkeep = 5000,
  FileName,
  Type = "Trace",
  Folder = NA,
  Model
)

Arguments

McmcArray	The array of MCMC output
maxDims	aesthetics argument for plot (dimensions of rows/columns), defaults to 8
parToMonitor	The parameters to be monitored
parnames	The names of parameters to be plotted
Nkeep	Number of parameter sets to save, defaults to 5000
FileName	The name of the file/directory
Type	Type of plot - defaults to "Trace", alternative is "ACF"
Folder	Optional argument for named folder to store results (in current working directory)
Model	The fitted model object

Value

Returns a list of output, by year and by Strata:Year

nwfsc-assess/nwfscDeltaGLM documentation built on July 8, 2023, 4:49 a.m.