Bayesian delta-GLM package for constructing indices of CPUE data

AFSCforeign_hauls | AFSC Haul join characteristics for 409 hauls. |

cMx | Convert object to matrix |

ComputeIndices | Compute index of abundance |

ComputeMleIndices | Compute MLE index of abundance |

ConvergencePlot | Compute MLE index of abundance |

corFunction | Function to calculate the correlations from the precision... |

defaultLimits | Haul characteristics for 1756 hauls. |

doMCMCDiags | This function is a high level function to be called by the... |

Example_Species | Haul characteristics for 4475 hauls. |

fitDeltaGLM | This function writes, and optionally runs the model in the... |

loadFn | Load functions |

logDensity | This function is in development stage, but used to generate... |

MapData | Plot tows on a map. This function produces a plot (originally... |

MCMCDiagnosticsPlot | Gelman-Rubin diagnostics. This function does MCMC... |

nwfscDeltaGLM-package | Package for conducting Bayesian estimation of CPUE index... |

PlotData | Plot data |

PlotOffset | PlotOffset plots the positive and presence absence offset by... |

PosteriorPredictive | Experimental function for calculating log-scores |

processData | Process raw haul data |

readIn | Scan data |

SA3 | Haul characteristics for 1756 hauls. |

SimSimple | Simulate data |

strata.fn | Assign latitude and longitude to strata |

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