MCMCDiagnosticsPlot: Gelman-Rubin diagnostics. This function does MCMC...

In nwfsc-assess/nwfscDeltaGLM: Bayesian delta-GLM package for constructing indices of CPUE data

Gelman-Rubin diagnostics. This function does MCMC diagnostics, producing several plots related to Gelman diagnostics, and optionally a plot for the Geweke statistics (though this doesn't converge sometimes)

Description

Gelman-Rubin diagnostics. This function does MCMC diagnostics, producing several plots related to Gelman diagnostics, and optionally a plot for the Geweke statistics (though this doesn't converge sometimes)

Usage

McmcDiagnosticsPlot(
  McmcList,
  parToMonitor,
  FileName = "",
  Folder = NA,
  Geweke = FALSE
)

Arguments

McmcList	An MCMC list object of model parameters
parToMonitor	Which parameter(s) of the fitted model object were monitored / estimated
FileName	Species and model specific, where the outupt will be generated to
Folder	Folder for output, defaults to working directory
Geweke	Boolean, whether to also calculate Geweke diagnostics, defaults to FALSE

nwfsc-assess/nwfscDeltaGLM documentation built on July 8, 2023, 4:49 a.m.