FMI: Forward Migration Index

In ocbe-uio/CellMigRation: Track Cells, Analyze Cell Trajectories and Compute Migration Statistics

Description

The FMI function automatically generates data for the forward migration index

Usage

FMI(object, TimeInterval = 10, export = FALSE, ExpName = NULL)

Arguments

object	CellMig class object, which is a list of data frames resulted from the PreProcessing.
TimeInterval	A numeric value of the time elapsed between successive frames in the time-lapse stack.
export	if 'TRUE' (default), exports function output to CSV file
ExpName	string, name of the experiment. Can be NULL

Value

An CellMig class Object with a data frame. The data frame is stored in the FMItable slot.

Author(s)

Salim Ghannoum [e-mail]

References

https://www.data-pulse.com/dev_site/cellmigration/

Examples

data(WSADataset)
wasDF=WSADataset[seq(1,300,by=1),]
wsaTD <- CellMig(wasDF)
wsaTD <- wsaPreProcessing(wsaTD,FrameN=55)
wsaTD <-FMI(wsaTD,TimeInterval=10, export=FALSE)

ocbe-uio/CellMigRation documentation built on Dec. 26, 2021, 10:19 p.m.