fixFM6: Forward Migration Sixst Part

Description Usage Arguments Value Author(s) References Examples

View source: R/all_internal_v3.R

Description

This function is a part of the ForwardMigration function, which generates data and plots for forward persistence and speed.

Usage

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fixFM6(
  Object,
  FMResultsTable,
  Step,
  sfptPLOT,
  afptPLOT,
  export,
  color,
  TimeInterval,
  sfpPLOT,
  ExpName,
  new.fld
)

Arguments

FMResultsTable

A data frame resulted from the fixFM6().

Step

A numeric value of the number of trajectory steps.

sfptPLOT

A logical vector that allows generating individual plots of persistence time vs speed per cell. Default is TRUE.

afptPLOT

A logical vector that allows generating a plot of persistence time vs speed for all cells. Default is TRUE.

export

if 'TRUE' (default), exports function output to CSV file

color

A vector of colors that will be used for the plots

TimeInterval

A numeric value of the time elapsed between successive frames in the time-lapse stack.

sfpPLOT

A logical vector that allows generating individual plots of angular persistence vs speed per cell. Default is TRUE.

ExpName

String, name of the experiment

new.fld

path to the folder where to save files

object

CellMig class object, which is a list of data frames resulted from the PreProcessing.

Value

A data frame named "FMResultsTable".

Author(s)

Salim Ghannoum salim.ghannoum@medisin.uio.no

References

https://www.data-pulse.com/dev_site/cellmigration/

Examples

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cellmigRation:::fixFM6(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1)

ocbe-uio/CellMigRation documentation built on Dec. 26, 2021, 10:19 p.m.