Man pages for ococrook/bandle
An R package for the Bayesian analysis of differential subcellular localisation experiments
| bandle | Differential localisation experiments using the bandle method |
| bandle-cpp | bessel function of the second kind from boost library |
| bandle-differentiallocalisation | Compute differential localisation probabilities from ms-based... |
| bandle-EFDR | Compute the expected False Discovery Rate |
| bandle_get_outliers | Number of outliers at each iteration of MCMC |
| bandle-gp | Compute GP gradient |
| bandle-gpfit | Fit a Gaussian process to spatial proteomics data |
| bandle-internal | sample allocations, probabilities and compute loglikilihoods |
| bandle-meanOrganelle | Computes Organelle means and variances using markers |
| bandle-package | An R package for the Bayesian analysis of differential... |
| bandleParams | Infrastructure to to store and process MCMC results |
| bandle-plots | inherits StatSratum |
| bandle-plots-convergence | Generates a histogram of ranks (a rank plot) for convergence |
| bandle-plots-prob | Generate a violin plot showing the probabilitiy of protein... |
| bandle-plots-spatial | Generate a PCA plot with smoothed probability contours |
| bandle-plots-translocations | Plot changes in localisation between two conditions/datasets |
| bandle-plots-translocations-table | Generate a table of differential localisations |
| bandle-predict | Make predictions from a bandle analysis |
| bandle-prior | Computes the Kullback-Leibler divergence between Polya-Gamma... |
| bandle-process | process bandle results |
| bandle-sim | Generate a dynamic spatial proteomics experiment |
| calculateGelman | Calculate the Gelman and Rubin diagnostic for bandle output |
| gpParams | Container for GP results |
| method-mr | robust Mahalanobis distance |
| plotOutliers | Generate trace and density plots for all chains |
