longtests/testthat/test_dataset.R

In omnideconv/SimBu: Simulate Bulk RNA-seq Datasets from Single-Cell Datasets

library(Matrix)
library(SummarizedExperiment)


setup_list <- SimBu::setup_sfaira(tempdir())

test_that("check sfaira for single dataset", {
  testthat::expect_s4_class(SimBu::dataset_sfaira(sfaira_id = "homosapiens_lungparenchyma_2019_10x3v2_madissoon_001_10.1186/s13059-019-1906-x", sfaira_setup = setup_list, name = "test_dataset"), "SummarizedExperiment")
})


test_that("check sfaira for multiple datasets", {
  testthat::expect_s4_class(SimBu::dataset_sfaira_multiple(
    sfaira_setup = setup_list,
    organisms = "Homo sapiens",
    tissues = "lung parenchyma",
    assay = "10x 3' v2",
    name = "human_lung"
  ), "SummarizedExperiment")
})