advanced_search_by_genes: Accessory function allowing the advanced_search by gene_ids,...

In onertipaday/Rcolombos: Interface to Colombos Compendia using the Exposed REST API

Description

Accessory function allowing the advanced_search by gene_ids, go, annotation

Usage

advanced_search_by_genes(organism = "bsubt", ids = NULL,
  geneNames = FALSE, g_search_type = "genes", ann_type)

Arguments

organism	A character containing the organism id: use listOrganisms to display the available organisms.
ids	A vector of strings representing gene_id, go terms or annotation entities according the search type.
geneNames	boolean if == FALSE (default) return the locustag otherwise the gene_name for the selected genes.
g_search_type	A string either genes, go or annotation.
ann_type	A string containing the selected gene_annotation_type: use listEntities to display the available entities.

Value

A data.frame containing locustag (gene_names), contrasts and M-values for the current organism and genes.

References

http://colombos.net

onertipaday/Rcolombos documentation built on May 24, 2019, 2:23 p.m.