listEntities: This method takes a string containing the nickname for the...

Description Usage Arguments Value References Examples

View source: R/utilities.R

Description

This method takes a string containing the nickname for the selected organism and a string containing the annotation type and return the available entities

Usage

1
listEntities(organism = "ecoli", annotation = "Pathway")

Arguments

organism

A character containing the organism id: use listOrganisms to display the available organisms.

annotation

A character containing the selected annotation type: use listAnnotationTypes to display the available types.

Value

A vector containing the available entities for the selected annotation type.

References

http://colombos.net

Examples

1
2
3
4
5
6
## Not run: 
 library("Rcolombos")
 pathway_entities <- listEntities(organism="bsubt", annotation="Pathway")
 Tr_entities <- listEntities("bsubt","Transcriptional regulation")

## End(Not run)

onertipaday/Rcolombos documentation built on May 23, 2017, 9:13 p.m.