getCompendium: This method allows to download/import the full compendium for...

In onertipaday/Rcolombos: Interface to Colombos Compendia using the Exposed REST API

Description

This method allows to download/import the full compendium for the selected organism

Usage

getCompendium(organism = "hpylo", path = NULL)

Arguments

organism	A character containing the organism id: use listOrganisms to display the available organisms.
path	A string indicating the path where the file will be either downloaded or read, if already retrieved

Value

A list containing three data.frame:

exprdata	the full compendium for the selected organism
condannot	The condition annotation for the selected organism
condontol	the condition ontology for the selected organism

References

http://colombos.net

Examples

## Not run: 
library('Rcolombos')
hpylo <- getCompendium("hpylo")

## End(Not run)

onertipaday/Rcolombos documentation built on May 24, 2019, 2:23 p.m.