quick_search: This method mimics the quick_search functionality of...

In onertipaday/Rcolombos: Interface to Colombos Compendia using the Exposed REST API

Description

This method mimics the quick_search functionality of Colombos. It takes a string containg the nickname for the selected organism and a vector of string representing the genes of interest for the specified organism and returns a list containing the locustags (gene_names), contrasts and M-values for the current selection.

Usage

quick_search(organism = "ecoli", genes, geneNames = FALSE)

Arguments

organism	A character containing the organism id: use listOrganisms to display the available organisms.
genes	A vector of strings representing the genes of interest.
geneNames	boolean if == FALSE (default) returns the locustag otherwise the gene_name for the selected genes.

Value

A data.frame containing locustag (gene_names), contrasts and M-values for the current organism and genes.

References

http://colombos.net

Examples

## Not run: 
 library("Rcolombos")
 my_module <- quick_search(organism="ecoli",
                     genes=c("b0400","b2805","b0567"),
                     geneNames=FALSE)
 heatmap(as.matrix(my_module), col=terrain.colors(15))

## End(Not run)

onertipaday/Rcolombos documentation built on May 24, 2019, 2:23 p.m.