Man pages for pachterlab/kma
KeepMeAround: Intron Retention Detection in RNA-Seq data
| check_groupings | Check groupings in data.frame |
| filter_low_frags | Filter introns with too few unique fragments. |
| filter_low_tpm | Low TPM filter |
| filter_perfect_psi | Perfect psi filter |
| get_batch_intron_zc | Get several zero coverage results and aggregate them |
| getCol | Get the columns from eXpress output |
| get_intron_zc | Read zero coverage data |
| intron_length | Get intron lengths from an identifier |
| intron_null_dist | Generate the null distribution |
| melt_intron_coords | Convert intron coords string into data.frame |
| newIntronRetention | Compute intron retention |
| print.IntronRetention | Print an IntronRetention object |
| retention_test | Retention test |
| summarize_zero_coverage | Summarize zero coverage results per condition |
