retention_test: Retention test
In pachterlab/kma: KeepMeAround: Intron Retention Detection in RNA-Seq data
Description
Usage
Arguments
Value
Description
Compute the retention test using resampling.
Usage
1
retention_test(obj, filtered_df = NULL, n_samp = 10000)
Arguments
obj
an IntronRetention object
filtered_df
a data.frame with columns intron, condition, and f_all.
If NULL, use the filters already computed and merge all of them.
n_samp
number of samples to generate the null distribution
Value
a data.frame with columns intron, condition, mean_retention,
var_retention, pvalue, and qvalue
pachterlab/kma documentation built on May 24, 2019, 5:58 p.m.
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Description Usage Arguments Value
Description
Compute the retention test using resampling.
Usage
1 | retention_test(obj, filtered_df = NULL, n_samp = 10000)
|
Arguments
obj |
an IntronRetention object |
filtered_df |
a data.frame with columns intron, condition, and f_all. If NULL, use the filters already computed and merge all of them. |
n_samp |
number of samples to generate the null distribution |
Value
a data.frame with columns intron, condition, mean_retention,
var_retention, pvalue, and qvalue
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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