summarize_zero_coverage: Summarize zero coverage results per condition

In pachterlab/kma: KeepMeAround: Intron Retention Detection in RNA-Seq data

Description

Check whether all zero coverage results agree per intron and condition

Usage

summarize_zero_coverage(ir, zc, prop_length = 0.2, level = 0.05)

Arguments

ir	an IntronRetention object
zc	a zero coverage data.frame
prop_length	the maximum proportion of the intron length the zero coverage region should span before returning FALSE
level	if the adjust p-value is less than level, then the intron will fail the filter

Value

an IntronRetention object with the data.frame updated to include the zero coverage filter

pachterlab/kma documentation built on May 24, 2019, 5:58 p.m.