get_batch_intron_zc: Get several zero coverage results and aggregate them
In pachterlab/kma: KeepMeAround: Intron Retention Detection in RNA-Seq data
Description
Usage
Arguments
Value
View source: R/zero_coverage.R
Description
Takes a list of zero coverage results and aggregates them into a data.frame
that can be used by an IntronRetention class as a filter.
Usage
1
get_batch_intron_zc(fnames, sample_names, condition_names, regex = "^chr")
Arguments
fnames
a character vector containing the path to files
sample_names
a character vector containing names for each sample. Note: this should correspond to names that are in the IntronRetention table
condition_names
this should correspond to the coditions used in newIntronRetention
Value
a data.frame containing all of the samples
pachterlab/kma documentation built on May 24, 2019, 5:58 p.m.
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Description Usage Arguments Value
View source: R/zero_coverage.R
Description
Takes a list of zero coverage results and aggregates them into a data.frame that can be used by an IntronRetention class as a filter.
Usage
1 | get_batch_intron_zc(fnames, sample_names, condition_names, regex = "^chr")
|
Arguments
fnames |
a character vector containing the path to files |
sample_names |
a character vector containing names for each sample. Note: this should correspond to names that are in the IntronRetention table |
condition_names |
this should correspond to the coditions used in newIntronRetention |
Value
a data.frame containing all of the samples
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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