filter_low_frags: Filter introns with too few unique fragments.

In pachterlab/kma: KeepMeAround: Intron Retention Detection in RNA-Seq data

Description

Filter introns with too few unique fragments.

Usage

filter_low_frags(obj, min_frags, filter_name = paste0("f_low_count_",
  min_frags))

Arguments

obj	IntronRetention object
min_frags	the minimum number of fragments required to pass the filter in every sample
filter_name	a character string denoting the column name in the final table

Value

an IntronRetention object with flat containing a new column named filter_name

pachterlab/kma documentation built on May 24, 2019, 5:58 p.m.