Man pages for pamgene/PamGeneMixed
Preprocessing and Modeling Kinase Activity Profiles in PamChip Data
| AutoPamGeneMix | Simultaneously Fitting Semi-Parametric Mixed Models to... |
| CleanedPamData-class | "CleanedPamData" |
| CleanedPeptide-class | "CleanedPeptide" |
| ObservedCellProfiles | Observed Cell Line Specific Profiles |
| ObservedGroupProfiles | Observed Group Specific Profiles |
| ObservedRepProfiles | Observed replicate specific profiles |
| PamChipAllPepResults-class | "PamChipAllPepResults" |
| PamChipData | PamChip Microarray Data |
| PamChipMixed-class | "PamChipMixed" |
| PamGeneMix | Fitting Semi-Parametric Mixed Models to PamChip Data |
| PreProcessAllPeptides | Pre-processing PamChip Array data |
| PreProcessPam | Pre-processing Cell Line specific data for a given Peptide |
| summary | Summarize Fitted Gamm Object for a given Peptide |
| TestPepModelData | PamChip Peptide Specific Cleaned Data |
| testVarCom | Wald Test to check variances are equal or not |
| VisualizePamGeneMix | Visualize PamGeneMix Output Objects |
| VolcanoPam | Visualize Output Object from AutoPamGeneMix |
