ObservedGroupProfiles: Observed Group Specific Profiles

In pamgene/PamGeneMixed: Preprocessing and Modeling Kinase Activity Profiles in PamChip Data

Description

This function estimate and visualize observed average profiles for each group for a given peptide.

Usage

ObservedGroupProfiles(pepname="Pep5",DataMat,
Trt.Group=c("Treatment","Control"),Res="R",log.true=FALSE)

Arguments

pepname	Name of the peptide to be used in visualization.
DataMat	A data frame of PamChip.
Trt.Group	Treatment group for which visualization is required. Default is for both "Treatment" and "Control" groups.
Res	Indicator for Responsive (R) or non-responsive (NR) group.
log.true	Default FALSE and no log2 transformation is performed for intensities.

Value

none

Author(s)

Pushpike Thilakarathne, Ziv Shkedy and Dan Lin

See Also

ObservedRepProfiles, ObservedCellProfiles

Examples

  data(PamChipData)


    
ObservedGroupProfiles(pepname="Pep142",DataMat=PamChipData,
Trt.Group=c("Treatment","Control"),Res=c("R","NR"),log.true=FALSE)

ObservedGroupProfiles(pepname="Pep142",DataMat=PamChipData,
Trt.Group=c("Treatment","Control"),Res=c("R","NR"),log.true=TRUE)

ObservedGroupProfiles(pepname="Pep108",DataMat=PamChipData,
Trt.Group=c("Treatment","Control"),Res=c("R","NR"),log.true=FALSE)

ObservedGroupProfiles(pepname="Pep108",DataMat=PamChipData,
Trt.Group=c("Treatment","Control"),Res=c("R","NR"),log.true=TRUE)

  

pamgene/PamGeneMixed documentation built on Dec. 31, 2020, 1:13 a.m.