ObservedRepProfiles: Observed replicate specific profiles

In pamgene/PamGeneMixed: Preprocessing and Modeling Kinase Activity Profiles in PamChip Data

Description

Observed replicate specific profiles for a given cell line and peptide.

Usage

ObservedRepProfiles(pepname,DataMat,cells,Trt.Group=c("Treatment","Control"),
Res="R",log.true=FALSE,cell.mean=T)

Arguments

pepname	Name of the peptide to be used in visualization.
DataMat	A data frame of PamChip.
cells	Name of the cell that needs to be visualized.
Trt.Group	Treatment group for which visualization is required. Default is for both "Treatment" and "Control" groups.
Res	Indicator for Responsive (R) or non-responsive (NR) group.
log.true	Default FALSE and no log2 transformation is performed for intensities.
cell.mean	A boolean parameter and default is TRUE. If TRUE cell line specific mean curve is drawn.

Value

none.

Author(s)

Pushpike Thilakarathne, Ziv Shkedy and Dan Lin

References

#add reference..

See Also

plot, ObservedCellProfiles, ObservedGroupProfiles

Examples

  data(PamChipData)


    ObservedRepProfiles(pepname="Pep1",DataMat=PamChipData,
    cells="SKBR3",Trt.Group=c("Treatment","Control"),Res="R",log.true=FALSE)
    
    ObservedRepProfiles(pepname="Pep3",DataMat=PamChipData,
    cells="SKBR3",Trt.Group=c("Treatment","Control"),Res="R",log.true=FALSE)
    
    ObservedRepProfiles(pepname="Pep130",DataMat=PamChipData,
    cells="SUM159",Trt.Group="Treatment",Res="R",log.true=FALSE)
    
    ObservedRepProfiles(pepname="Pep130",DataMat=PamChipData,
    cells="SUM159",Trt.Group="Control",Res="R",log.true=FALSE)
    

pamgene/PamGeneMixed documentation built on Dec. 31, 2020, 1:13 a.m.