TestPepModelData: PamChip Peptide Specific Cleaned Data

In pamgene/PamGeneMixed: Preprocessing and Modeling Kinase Activity Profiles in PamChip Data

Description

This is a cleaned PamChip Peptide specific dataset where there are columns for ArrayID, Cell line names, Responsive Statuses, Treatment indicator, Time points, and Replicate ID. Intensity measurements for the peptide is given in the last column.

Usage

data(TestPepModelData)

Format

The format is a data frame which has following structure.

ID	ResState	ArrayNum	CellName	TreatName	Time	Peptide
6	R	0559C80	H3255	Control	11	2706
6	R	0559C80	H3255	Control	16	4442
6	R	0559C80	H3255	Control	21	5045
6	R	0559C80	H3255	Control	26	5491
6	R	0559C80	H3255	Control	31	5950
6	R	0559C80	H3255	Control	36	6124

Author(s)

Pushpike Thilakarathne, Ziv Shkedy and Dan Lin

See Also

PamChipData

Examples

#-- load Data --
data(TestPepModelData)

#-- Check Data --
TestPepModelData[1:5,]
  
#-- Unique Time Points --
UTime<-unique(TestPepModelData[,c("Time")])
UTime

#-- Responsive and Non-Responsive Cell Lines --
RnRcellines<-unique(TestPepModelData[,c("CellName","ResState")])
rownames(RnRcellines)<-1:20
RnRcellines

#-- Number of Plates (96 well plates)---
Plates<-unique(TestPepModelData[,c("ArrayNum")])
Plates

pamgene/PamGeneMixed documentation built on Dec. 31, 2020, 1:13 a.m.