PamChipMixed-class: "PamChipMixed"

In pamgene/PamGeneMixed: Preprocessing and Modeling Kinase Activity Profiles in PamChip Data

Description

Object returned by the method PamGeneMix.

Slots

res.t1

A vector of length two in which p-value for comparing group-specific velocities at t=0 along with test statistic are returned.

res.tend

A vector of length two in which p-value for comparing group-specific velocities at t=max(t) along with test statistic are returned.

res.tany

If test.at is given then a vector of length two in which p-value for comparing group-specific velocities at t=tgiven along with test statistic are returned. Otherwise NA is returned.

test.at

Time point at which additional test needs to be performed.

PValProfile

A vector of size two where first gives p-value for comparing group-specific velocities for entire profile and second value gives the Ch-Squared test statistic.

t.mesh

Fine grid of time points that has been used to produce smooth curves.

End.time

Maximum time point in the Dataset.

n.g

Number of groups in the data

gnames

Group names.

v

Estimated velocity. And it is a vector of size equals to length of the t.mesh times number of groups.

v.sd

Estimated variances at each time point. And it is a vector of size equals to length of the t.mesh times number of groups.

Vall

Full variance covariance matrix of the estimated velocities.

yfitfixef

Fitted mean function. Returns as a vector of size equals to length(t.mesh) times n.g

yfit

Estimated BLUP.

gammran3

Fitted gamm object.

PTx

A data frame used to fit the model.

Methods

show

Use show(PamChipMixed-object) for brief information.

summary

Use summary(PamChipMixed-object) to apply the classic summary() function to the PamChipMixed-object), s. summary,PamChipMixed-method

Author(s)

Pushpike Thilakarathne, Ziv Shkedy and Dan Lin

See Also

PamGeneMix

pamgene/PamGeneMixed documentation built on Dec. 31, 2020, 1:13 a.m.