ObservedCellProfiles: Observed Cell Line Specific Profiles

In pamgene/PamGeneMixed: Preprocessing and Modeling Kinase Activity Profiles in PamChip Data

Description

This function visualizes the observed Cell line specific profiles for a given peptide of the PamChip microarray data.

Usage

ObservedCellProfiles(pepname,DataMat,
Trt.Group=c("Treatment","Control"),Res,log.true=FALSE)

Arguments

pepname	Name of the peptide to be used in visualization.
DataMat	A data frame of PamChip.
Trt.Group	Treatment group for which visualization is required. Default is for both "Treatment" and "Control" groups.
Res	Indicator for Responsive (R) or non-responsive (NR) group.
log.true	Default FALSE and no log2 transformation is performed for intensities.

Value

none

Author(s)

Pushpike Thilakarathne, Ziv Shkedy and Dan Lin

See Also

ObservedRepProfiles, ObservedGroupProfiles

Examples

#--------



for (i in 1:148) {
    par(ask=TRUE)
    ObservedCellProfiles(pepname=paste("Pep",i,sep=""),DataMat=PamChipData,
    Trt.Group=c("Treatment","Control"),Res=c("R","NR"),log.true=FALSE)
    cat(i)
}

ObservedCellProfiles(pepname="Pep58",DataMat=PamChipData,
Trt.Group=c("Treatment","Control"),Res=c("R","NR"),log.true=FALSE)

ObservedCellProfiles(pepname="Pep9",DataMat=PamChipData,
Trt.Group=c("Treatment","Control"),Res=c("R","NR"),log.true=FALSE)

#------------log2 transformed -----------------------------
ObservedCellProfiles(pepname="Pep9",DataMat=PamChipData,
Trt.Group=c("Treatment","Control"),Res=c("R","NR"),log.true=TRUE)

ObservedCellProfiles(pepname="Pep26",DataMat=PamChipData,
Trt.Group=c("Treatment","Control"),Res=c("R","NR"),log.true=TRUE)



 

pamgene/PamGeneMixed documentation built on Dec. 31, 2020, 1:13 a.m.