Description Usage Arguments Value Examples
The number of entries returned by searching
1 2 3 4 |
query |
character, the keywords to search. For example: "stress". |
speciesFilter |
numeric, filter by species. The NCBI taxon ID (https://www.ensembl.org/info/about/species.html). For example, 9606 represents Homo sapiens (human), 10116 represents Rattus norvegicus (rat), 9986 represents Oryctolagus cuniculus (rabbit), 10090 is Mus musculus (mouse), and 7955 is Danio rerio (Zebrafish). |
ptmsFilter |
character, filter by PTM (Post-translational modification) annotation. For example: "phosphorylation". |
tissueFilter |
character, filter by tissue annotation. For example: "HEK-293 cell", "breast", "cell culture", "brain". |
diseaseFilter |
character, the disease to filter. For example: "disease free", "cancer". |
titleFilter |
character, filter the title for keywords (example: stress). |
instrumentFilter |
character, the instrument to filter. For example: "LTQ Orbitrap", "LTQ", "LTQ FT", "LTQ Orbitrap Velos". |
experimentTypeFilter |
character, filter by experiment type. For example: "Bottom-up proteomics", "Affinity purification coupled with mass spectrometry proteomics", "Shotgun proteomics", "shotgun". |
quantificationFilter |
character, the quantification to filter. For example: "Spectrum count/molecular weight", "Spectrum counting", "label-free". |
projectTagFilter |
character, filter by project tags (example: Biomedical). |
the number of entries
1 2 3 4 5 6 7 | {
## Not run:
# search "breast" on Homo sapiens (9606)
prideCount(query = "breast", speciesFilter = 9606)
## End(Not run)
}
|
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