projectList: The project entries information returned by searching
In paodan/prideDownloader:

Description Usage Arguments Value Examples

View source: R/projectList.R

The project entries information returned by searching

projectList(query = "*", show = 10000, page = 0, sort = NULL,
  order = "asc", speciesFilter = NULL, ptmsFilter = NULL,
  tissueFilter = NULL, diseaseFilter = NULL, titleFilter = NULL,
  instrumentFilter = NULL, experimentTypeFilter = NULL,
  quantificationFilter = NULL, projectTagFilter = NULL)

`query`	character, the keywords to search. For example: "stress".
`show`	integer, how many results to return per page. Maximum page size is: 10000 (default).
`page`	character, which page (starting from 0) of the result to return. The default is 0.
`sort`	character, the field to sort on (e.g. score, publication_date, id or project_title).
`order`	character, the sorting order ("asc" or "desc"). The default is "asc"
`speciesFilter`	numeric, filter by species. The NCBI taxon ID (https://www.ensembl.org/info/about/species.html). For example, 9606 represents Homo sapiens (human), 10116 represents Rattus norvegicus (rat), 9986 represents Oryctolagus cuniculus (rabbit), 10090 is Mus musculus (mouse), and 7955 is Danio rerio (Zebrafish).
`ptmsFilter`	character, filter by PTM (Post-translational modification) annotation. For example: "phosphorylation".
`tissueFilter`	character, filter by tissue annotation. For example: "HEK-293 cell", "breast", "cell culture", "brain".
`diseaseFilter`	character, the disease to filter. For example: "disease free", "cancer".
`titleFilter`	character, filter the title for keywords (example: stress).
`instrumentFilter`	character, the instrument to filter. For example: "LTQ Orbitrap", "LTQ", "LTQ FT", "LTQ Orbitrap Velos".
`experimentTypeFilter`	character, filter by experiment type. For example: "Bottom-up proteomics", "Affinity purification coupled with mass spectrometry proteomics", "Shotgun proteomics", "shotgun".
`quantificationFilter`	character, the quantification to filter. For example: "Spectrum count/molecular weight", "Spectrum counting", "label-free".
`projectTagFilter`	character, filter by project tags (example: Biomedical).

a data.frame of the details of searched entries, including: projectAccession, title, projectDescription, publicationDate, submissionType, numAssays, species tissues, ptmNames, instrumentNames, and projectTags.

{
## Not run: 
# Search for stress
projectList(query = "stress")

# Search for stress and filtered by human
projectList(query = "stress", speciesFilter = 9606)

# Search for stress and filtered by human and sorted by publication_date
projectList(query = "stress", speciesFilter = 9606,
            sort = "publication_date", order = "desc")

## End(Not run)
}