Description Usage Arguments Value Examples
The project entries information returned by searching
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query |
character, the keywords to search. For example: "stress". |
show |
integer, how many results to return per page. Maximum page size is: 10000 (default). |
page |
character, which page (starting from 0) of the result to return. The default is 0. |
sort |
character, the field to sort on (e.g. score, publication_date, id or project_title). |
order |
character, the sorting order ("asc" or "desc"). The default is "asc" |
speciesFilter |
numeric, filter by species. The NCBI taxon ID (https://www.ensembl.org/info/about/species.html). For example, 9606 represents Homo sapiens (human), 10116 represents Rattus norvegicus (rat), 9986 represents Oryctolagus cuniculus (rabbit), 10090 is Mus musculus (mouse), and 7955 is Danio rerio (Zebrafish). |
ptmsFilter |
character, filter by PTM (Post-translational modification) annotation. For example: "phosphorylation". |
tissueFilter |
character, filter by tissue annotation. For example: "HEK-293 cell", "breast", "cell culture", "brain". |
diseaseFilter |
character, the disease to filter. For example: "disease free", "cancer". |
titleFilter |
character, filter the title for keywords (example: stress). |
instrumentFilter |
character, the instrument to filter. For example: "LTQ Orbitrap", "LTQ", "LTQ FT", "LTQ Orbitrap Velos". |
experimentTypeFilter |
character, filter by experiment type. For example: "Bottom-up proteomics", "Affinity purification coupled with mass spectrometry proteomics", "Shotgun proteomics", "shotgun". |
quantificationFilter |
character, the quantification to filter. For example: "Spectrum count/molecular weight", "Spectrum counting", "label-free". |
projectTagFilter |
character, filter by project tags (example: Biomedical). |
a data.frame of the details of searched entries, including: projectAccession, title, projectDescription, publicationDate, submissionType, numAssays, species tissues, ptmNames, instrumentNames, and projectTags.
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## Not run:
# Search for stress
projectList(query = "stress")
# Search for stress and filtered by human
projectList(query = "stress", speciesFilter = 9606)
# Search for stress and filtered by human and sorted by publication_date
projectList(query = "stress", speciesFilter = 9606,
sort = "publication_date", order = "desc")
## End(Not run)
}
|
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